Publications
Authors: Pathak, Brincat, Xiong, Organtzidis, Protter, Du, Strey, Mujica-Parodi, Miller, Granger. Keywords: propofol, anesthesia, anesthetic, GABA-A, receptor, neuropharmacology, pharmacological modulation, mechanistic model, multiscale, simulation, model, modeling, thalamocortical, core-matrix, thalamus, cortex, spiking, field potentials, coherence, auditory oddball, sensory processing, macaque, functional connectivity, humans, dose-dependent biomarker, biomarker, inter-stimulus cortical activity, predictive neuropharmacology.
Authors: Carter, Kuang, Chesebro, Jumana, Burke, Pathak, Ratai, Miller, Granger, Mujica-Parodi. Keywords: corticostriatal, circuit model, biophysical model, mechanistic, computational model, model, modeling, local field potential, LFP, fMRI, functional magnetic resonance imaging, balloon model, hemodynamic, BOLD, prefrontal-striatal coherence, prefrontal cortex, striatum, learning, category-selective representations, reward bias, individual differences, single-subject, amplitude of low-frequency fluctuations, ALFF, dopamine, dopaminergic, biomarkers.
Authors: Razban, Banerjee, Mujica-Parodi, Bahar. Keywords: structural connectivity, functional connectivity, structure-function, Markov model, Markovian process, signal transmission, random walk, commute time, diffusion MRI, dMRI, white matter tracts, fMRI, functional MRI, functional magnetic resonance imaging, UK Biobank, HCP, Human Connectome Project, communicability, search information, polysynaptic, indirect connectivity.
Authors: van Nieuwenhuizen, Antal, Hone-Blanchet, Lithen, McMahon, Jenkins, Ratai, Mujica-Parodi. Keywords: magnetic resonance imaging, structural MRI, functional MRI, fMRI, magnetic resonance spectroscopy, MRS, glucose, atrophy, aging, fasting, metabolic, metabolism, diabetes, brain.
Authors: Antal, Mujica-Parodi, Strey, Ratai, Mangia, Rothman. Keywords: model, modeling, glucose, ketones, ketosis, Neuroblox, magnetic resonance spectroscopy, MRS, metabolic, metabolism, flux equations, glycolysis, mitochondria, energy.
Authors: Chesebro, Hofmann, Dixit, Miller, Granger, Edelman, Rackauckas, Mujica-Parodi, Strey. Keywords: scientific machine learning, SciML, PEM-UDE, prediction-error method, universal differential equations, UDE, chaotic systems, chaos, governing equations, reduced-order equations, reduced-order closure, Rossler attractor, electrical circuit, noise, neural populations, neural mass model, Izhikevich neurons, sparse connectivity, connection density, oscillation frequency, synchrony, intracranial recordings, multi-scale, multiscale, model, modeling.
Authors: Chesebro, Rohm, Antal, Weistuch, Strey, Ratai, Jones, Mujica-Parodi. Keywords: network, fMRI, functional magnetic resonance imaging, MRI, genetics, genome, diabetes, male, female, age, aging, dementia, metabolic, metabolism.
Authors: Kuang, Chesebro, Strey, Clouston, Luft, Mujica-Parodi. Keywords: PTSD, post-traumatic stress disorder, cognitive impairment, cognitive decline, World Trade Center, 9/11, rescue and recovery, trauma, stress, cortisol, neurotoxicity, cortisol-induced neurotoxicity, p53, machine learning, fMRI, functional magnetic resonance imaging, mRNA expression, gene expression, transcriptomic, ZNF48, TOMM40, GRIN1, structural equation modeling, SEM, biomarkers.
Authors: Mujica-Parodi, Öngür, Ongur, Richardson. Keywords: precision neurotherapeutics, precision medicine, personalized, individualized, neurological, neurodegenerative, psychiatric disorders, drug discovery, fragment-based drug discovery, pharmacokinetic modeling, quantitative systems pharmacology, QSP, neuromodulation, closed-loop, biomarkers, neuroimaging, pharmacogenomics, digital health, single-subject parameter estimation, signal-to-noise ratio, regulatory, FDA, in silico, artificial intelligence, AI, computational modeling, mental health, review, central nervous system, medical device, neurotransmitter, pharmaceutical.
Authors: Pathak, Brincat, Organtzidis, Strey, Senneff, Antzoulatos, Mujica-Parodi, Miller, Granger. Keywords: Neuroblox, model, modeling, multiscale, biomimetic computational primitive, BCP, category learning, cognition, neuron, incongruent, macaque.
Authors: Townend, Staginnus, Gao, Alexander, Arolt, Banaschewski, Beesdo-Baum, Bellgrove, Benegal, Blair, Blanco-Hinojo, Boeken, Böhnlein, Bohnlein, Bölte, Bolte, Bonnekoh, Brandeis, Bressan, Breuer, Bruin, Buitelaar, Burkhouse, Calkins, Cano, Cardoner, Chen, Chen, Coghill, Colins, Connolly, Craig, Cullen, Dannlowski, Davey, Dietrich, Dong, Freitag, Frodl, Goossens, Grotegerd, Gur, Gur, Haavik, Hagan, Hahn, Hamm, Harrison, Hartman, Herrmann, Ho, Hoekstra, Holla, Ibrahim, Jackowski, Jamalabadi, Jiang, Kircher, Konrad, Kraus, Kuntsi, Langhammer, Lazaro, Leehr, Lueken, Ma, MacMaster, Manfro, Martinelli, Meinert, Meinert, Michałowski, Michalowski, Ming, Moeck, Muehlhan, Mujica-Parodi, Mwangi, Neufeld, Nigg, O'Gorman Tuura, Oh, Oosterlaan, Paloyelis, Pan, Passamonti, Peñate, Penate, Phan, Plessen, Pujol, Remnélius, Remnelius, Rivero, Rubia, Salas, Salum, Satterthwaite, Schienle, Schrammen, Schruers, Schumann, Sethi, Silk, Skokauskas, Smoller, Soares, Sørensen, Sorensen, Stadler, Stevens, Straube, Straube, Ströhle, Strohle, Sudre, Sukhodolsky, Sully, Sun, Sylvester, Toschi, van der Werff, Vance, Vermeiren, Wabnegger, Wang, Wendt, Whittle, Wiemer, Winkler, Wittchen, Wu, Wu, Yang, Yang, Yao, Zhang, Zhou, Zugman, Zunta-Soares, Zwanzger, Thomopoulos, Jahanshad, Thompson, Hilbert, Baskin-Sommers, Cecil, Aghajani, Pine, van der Wee, Stein, Groenewold, Bas-Hoogendam, Han, Pozzi, Schmaal, Franke, Hoogman, Walton, De Brito, Fairchild, ENIGMA Antisocial Behavior, Anxiety, ADHD, and MDD Working Groups. Keywords: ENIGMA, consortium, mega-analysis, structural MRI, magnetic resonance imaging, brain structure, cortical thickness, surface area, subcortical volume, youth, children, adolescents, internalizing, externalizing, transdiagnostic, anxiety, depression, MDD, ADHD, conduct disorder, antisocial behavior, amygdala, insula, psychiatry.
Authors: Andreazza, Barros, Behnke, Ben-Shachar, Berretta, Chouinard, Do, Edwin Thanarajah, Ehrenreich, Falkai, Ford, Freyberg, Gilbert-Jaramillo, Glausier, Goyal, Hahn, Herculano-Houzel, Hofmann, Kolassa, Mack, Mavioglu, McCullumsmith, Milaneschi, Molina, Mujica-Parodi, Öngür, Ongur, Paulus, Peleg-Raibstein, Perry, Picard, Pillinger, Rae, Rothman, Sarnyai, Steiner, Upthegrove, Vernon, Wall, Weistuch. Keywords: psychiatry, metabolism, metabolic, ketosis, ketogenic.
Authors: van Nieuwenhuizen, Antal, Hone-Blanchet, Lithen, McMahon, Nikolaidou, Kuang, Clarke, Jenkins, Rothman, Mujica-Parodi, Ratai. Keywords: ketosis, ketones, ketone monoester, glucose, metabolism, metabolic, bioenergetics, antioxidants, energy markers, creatine, GABA, glutamate, glutamine, magnetic resonance spectroscopy, MRS, 1H-MRS, 7T, ultra high field, resting-state fMRI, functional magnetic resonance imaging, functional connectivity, posterior cingulate, lifespan.
Authors: Hofmann, Chesebro, Rackauckas, Mujica-Parodi, Friston, Edelman, Strey. Keywords: spectral DCM, dynamic causal modeling, DCM, Julia, ModelingToolkit, Neuroblox, automatic differentiation, parameter estimation, model fitting, inverse problem, SPM, fMRI, functional magnetic resonance imaging, LFP, neuroimaging, circuit, model, modeling, software, 7T.
Authors: Antal, van Nieuwenhuizen, Chesebro, Strey, Jones, Clarke, Weistuch, Ratai, Dill, Mujica-Parodi. Keywords: brain aging, aging, age, midlife, critical window, nonlinear, brain networks, network destabilization, fMRI, functional MRI, functional magnetic resonance imaging, glucose, glucose homeostasis, insulin, GLUT4, APOE, MCT2, ketones, ketone transporter, gene expression, metabolic, metabolism, metabolic intervention, neurodegenerative diseases, biomarkers, vascular, inflammatory, neuron.
Authors: Chesebro, Antal, Weistuch, Mujica-Parodi. Keywords: computational metabolic psychiatry, metabolic psychiatry, psychiatry, computational models, computational, model, modeling, multiscale, circuit, dysregulation, feedback, tricarboxylic acid cycle, TCA cycle, ion channel, neural microassembly, macrocircuit, neural, endocrine, immune, vascular, in vitro, in vivo, personalized diagnostics, allostasis, homeostasis, metabolic, metabolism.
Authors: Carter, Mujica-Parodi, Strey. Keywords: Ornstein-Uhlenbeck process, parameter estimation, measurement noise, noise, thermal noise, multiplicative noise, white noise, signal separation, Hamilton Monte Carlo, Hamiltonian Monte Carlo, HMC, algorithm, sampling rate.
Authors: Antal, Chesebro, Strey, Mujica-Parodi, Weistuch. Keywords: Occam's razor, FixFit, deep learning, neural network, bottleneck layer, model reduction, redundancy, model parameters, parameter fitting, latent parameters, composite parameters, Kepler orbit, blood glucose regulation, glucose, multi-scale brain model, multiscale, model, modeling.
Authors: Razban, Antal, Dill, Mujica-Parodi. Keywords: integration, segregation, integration-segregation, aging, age, Ising model, statistical physics, order, disorder, fMRI, functional MRI, functional magnetic resonance imaging, structural MRI, diffusion MRI, dMRI, brain dynamics, connection strength.
Authors: Kula, Antal, Weistuch, Gackière, Gackiere, Barre, Velado, Hubbard, Kukley, Mujica-Parodi, Smith. Keywords: D-β-hydroxybutyrate, D-βHb, beta-hydroxybutyrate, BHB, ketone bodies, ketones, insulin resistance, acute insulin resistance, GLUT4, glucose, glycolysis, mitochondrial respiration, metabolism, hypometabolic, hippocampus, CA3-CA1, synaptic activity, long-term potentiation, LTP, axonal conduction, synchronization, action potential, neurons, mouse.
Authors: van Nieuwenhuizen, Chesebro, Polizu, Clarke, Strey, Weistuch, Mujica-Parodi. Keywords: ketosis, ketones, ketone ester, glucose, metabolism, metabolic, aging, age, potassium, K+, ion channels, ion gradients, synchrony, desynchronization, brain networks, network stability, resting-state fMRI, functional magnetic resonance imaging, EEG, electroencephalography, multiscale modeling, neural mass model, model, modeling.
Authors: Kumar, Strey, Mujica-Parodi. Keywords: control systems, control circuit, control systems engineering, controllability, regulation, dysregulation, system identification, perturbation, stress, single-subject, individual variability, precision, neurodiagnostics, fMRI, functional magnetic resonance imaging, generative model, computational model, modeling, psychiatry, circuit.
Authors: Razban, Pachter, Dill, Mujica-Parodi. Keywords: neurodevelopment, development, connectomics, connectome, diffusion MRI, dMRI, white matter, tracts, network neuroscience, percolation theory, targeted attack, giant cluster, statistical mechanics, UK Biobank, ABCD, Adolescent Brain Cognitive Development, Developing Human Connectome Project, aging.
Authors: Chesebro, Mujica-Parodi, Weistuch. Keywords: ion gradients, ion pumps, bifurcation, bifurcation theory, neural mass model, Larter-Breakspear, Morris-Lecar, conductance-based model, multiscale, model, modeling, metabolism, metabolic, energy, aging, sodium, calcium, potassium, synchrony, coherence, nonlinear dynamics.
Authors: Hone-Blanchet, Antal, McMahon, Lithen, Smith, Stufflebeam, Yen, Lin, Jenkins, Mujica-Parodi, Ratai. Keywords: ketones, beta-hydroxybutyrate, D-βHB, BHB, ketone monoester, glucose, metabolism, metabolic, fasting, GABA, glutamate, magnetic resonance spectroscopy, MRS, 7T, ultra high field, anterior cingulate, posterior cingulate, aging, age, neurotransmitters.
Authors: Antal, McMahon, Sultan, Lithen, Wexler, Dickerson, Ratai, Mujica-Parodi. Keywords: type 2 diabetes, T2DM, diabetes, aging, brain aging, cognitive decline, cognition, executive function, processing speed, neurodegeneration, gray matter atrophy, ventral striatum, metformin, UK Biobank, meta-analysis, MRI, functional MRI, fMRI, neuroimaging, metabolism, neurometabolic, biomarker, epidemiology.
Authors: Mason, Hecht, Davis, Natale, Hartogensis, Damaso, Claypool, Dilchert, Dasgupta, Purawat, Viswanath, Klein, Chowdhary, Fisher, Anglo, Puldon, Veasna, Prather, Pandya, Fox, Busch, Giordano, Mercado, Song, Jaimes, Baum, Telfer, Philipson, Collins, Rao, Wang, Bandi, Choe, Epel, Epstein, Krasnoff, Lee, Lee, Lopez, Mehta, Melville, Moon, Mujica-Parodi, Noel, Orosco, Rideout, Robishaw, Rodriguez, Shah, Siegal, Gupta, Altintas, Smarr. Keywords: COVID-19, SARS-CoV-2, wearable device, Oura Ring, TemPredict, temperature, physiological data, early detection, machine learning, classification, algorithm.
Authors: Bas-Hoogendam, Groenewold, Aghajani, Freitag, Harrewijn, Hilbert, Jahanshad, Thomopoulos, Thompson, Veltman, Winkler, Lueken, Pine, van der Wee, Stein, ENIGMA-Anxiety Working Group. Keywords: ENIGMA, ENIGMA-Anxiety, consortium, working group, anxiety, anxiety disorders, generalized anxiety disorder, GAD, panic disorder, social anxiety disorder, specific phobia, neuroimaging, magnetic resonance imaging, MRI, genetics, amygdala, limbic system, prefrontal cortex, global mental health.
Authors: Sultan, Mujica-Parodi, Skiena. Keywords: NeuroPredictome, predictome, UK Biobank, phenotype, neuroimaging, fMRI, functional magnetic resonance imaging, prediction, data-driven, brain mapping, decoding, meta-analysis, public resource.
Authors: Kumar, Mujica-Parodi, Wenke, Amgalan, Lithen, Govindarajan, Makaryus, Benveniste, Strey. Keywords: nicotine, addiction, cigarette, substance abuse, craving, reward, control system, control circuit, nasal drug delivery, nebulizer, MRI-compatible device, pharmacokinetics, single-subject, MRI, dysregulation, neuromodulation.
Authors: Weistuch, Mujica-Parodi, Razban, Antal, van Nieuwenhuizen, Amgalan, Dill. Keywords: aging, age, metabolism, metabolic, neurometabolism, hypometabolism, synchrony, network synchrony, criticality, critical point, Ising model, statistical physics, generative model, fMRI, functional magnetic resonance imaging, functional connectivity, brain networks.
Authors: Weistuch, Mujica-Parodi, Dill. Keywords: refractory period, brain waves, oscillations, maximum caliber, mean field, neural populations, neurons, model, modeling, dynamical inference.
Authors: Beacher, Mujica-Parodi, Gupta, Ancora. Keywords: machine learning, ML, clinical trials, Phase III, prostate cancer, cancer, oncology, bicalutamide, outcome prediction, precision medicine, drug development.
Authors: Harrewijn, Cardinale, Groenewold, Bas-Hoogendam, Aghajani, Hilbert, Cardoner, Porta-Casteràs, Porta-Casteras, Gosnell, Salas, Jackowski, Pan, Salum, Blair, Blair, Hammoud, Milad, Burkhouse, Phan, Schroeder, Strawn, Beesdo-Baum, Jahanshad, Thomopoulos, Buckner, Nielsen, Smoller, Soares, Mwangi, Wu, Zunta-Soares, Assaf, Diefenbach, Brambilla, Maggioni, Hofmann, Straube, Andreescu, Berta, Tamburo, Price, Manfro, Agosta, Canu, Cividini, Filippi, Kostić, Kostic, Munjiza Jovanovic, Alberton, Benson, Freitag, Filippi, Gold, Leibenluft, Ringlein, Werwath, Zwiebel, Zugman, Grabe, Van der Auwera, Wittfeld, Völzke, Volzke, Bülow, Bulow, Balderston, Ernst, Grillon, Mujica-Parodi, van Nieuwenhuizen, Critchley, Makovac, Mancini, Meeten, Ottaviani, Ball, Fonzo, Paulus, Stein, Gur, Gur, Kaczkurkin, Larsen, Satterthwaite, Harper, Myers, Perino, Sylvester, Yu, Lueken, Veltman, Thompson, Stein, Van der Wee, Winkler, Pine. Keywords: ENIGMA, ENIGMA-Anxiety, consortium, mega-analysis, generalized anxiety disorder, GAD, anxiety, brain structure, structural MRI, magnetic resonance imaging, cortical thickness, surface area, subcortical volume, FreeSurfer, ventral diencephalon, sex differences, children, adults.
Authors: Amgalan, Taylor, Mujica-Parodi, Siegelmann. Keywords: neuronal clusters, integrate-and-fire, self-similar, fractal, scales, coarse-graining, hierarchical clustering, brain networks, network, fMRI, computational simulation, model, modeling, multiscale, artificial intelligence, evolution, development.
Authors: Kumar, Tan, Kriegstein, Lithen, Polimeni, Mujica-Parodi, Strey. Keywords: functional magnetic resonance imaging, fMRI, 7T, ultra high field, phantom, calibration, precision medicine, n=1, BrainDancer, dynamic, Dynamic fidelity, Dynamic phantom, Marchenko-Pastur distribution, Multi-site, Scanner instability.
Authors: Amgalan, Mujica-Parodi, Skiena. Keywords: spatial autocorrelation, Moran's I, Geary's C, algorithm, linear-time, statistics, clustering.
Authors: Weistuch, Agozzino, Mujica-Parodi, Dill. Keywords: network inference, inverse problem, network topology, maximum caliber, time-dependent signals, dynamical signals, neurons, neural network, genetic toggle switch, model, modeling.
Authors: Zugman, Harrewijn, Cardinale, Zwiebel, Freitag, Werwath, Bas-Hoogendam, Groenewold, Aghajani, Hilbert, Cardoner, Porta-Casteràs, Porta-Casteras, Gosnell, Salas, Blair, Blair, Hammoud, Milad, Burkhouse, Phan, Schroeder, Strawn, Beesdo-Baum, Thomopoulos, Grabe, Van der Auwera, Wittfeld, Nielsen, Buckner, Smoller, Mwangi, Soares, Wu, Zunta-Soares, Jackowski, Pan, Salum, Assaf, Diefenbach, Brambilla, Maggioni, Hofmann, Straube, Andreescu, Berta, Tamburo, Price, Manfro, Critchley, Makovac, Mancini, Meeten, Ottaviani, Agosta, Canu, Cividini, Filippi, Kostić, Kostic, Munjiza, Filippi, Leibenluft, Alberton, Balderston, Ernst, Grillon, Mujica-Parodi, van Nieuwenhuizen, Fonzo, Paulus, Stein, Gur, Gur, Kaczkurkin, Larsen, Satterthwaite, Harper, Myers, Perino, Yu, Sylvester, Veltman, Lueken, Van der Wee, Stein, Jahanshad, Thompson, Pine, Winkler. Keywords: ENIGMA, ENIGMA-Anxiety, consortium, mega-analysis, meta-analysis, generalized anxiety disorder, GAD, anxiety, data sharing, methods, quality control, neuroimaging, brain structure, structural MRI, genetics, pipeline.
Authors: Mujica-Parodi, Strey. Keywords: computational psychiatry, psychiatry, model, modeling, computational model, dynamical systems, generative models, system identification, control systems, circuit, machine learning, RDoC, fMRI, neuroimaging, statistics, hypothesis-driven, data-driven.
Authors: Mujica-Parodi, Amgalan, Sultan, Antal, Sun, Skiena, Lithen, Adra, Ratai, Weistuch, Govindarajan, Strey, Dill, Stufflebeam, Veech, Clarke. Keywords: diet, ketogenic diet, ketones, ketosis, ketone ester, beta-hydroxybutyrate, glucose, fasting, insulin resistance, metabolism, metabolic, hypometabolism, brain network stability, network stability, biomarker, brain aging, aging, age, dementia, cognition, fMRI, functional magnetic resonance imaging, 7T, ultra high field, lifespan.
Authors: Ide, Nedic, Wong, Strey, Lawson, Dickerson, Wald, La Camera, Mujica-Parodi. Keywords: oxytocin, trust, Iterative Trust Game, neuroeconomics, reinforcement learning, reward, prediction error, Bayesian modeling, social learning, feedback learning, males, fMRI, functional magnetic resonance imaging, 7T, ultra high field, orbitofrontal cortex, amygdala, habenula, reward circuit, connectivity.
Authors: Mujica-Parodi, Cha, Gao. Keywords: control systems, control circuit, regulation, negative feedback, prefrontal-limbic, inferior frontal gyrus, IFG, ventromedial prefrontal cortex, vmPFC, amygdala, limbic, threat detection, fear, anxiety, sensation-seeking, reckless, addiction, chaotic dynamics, computational model, modeling, fMRI, neuroimaging, review.
Authors: Carlson, Rubin, Mujica-Parodi. Keywords: emotion, affect, emotional numbing, anxiety, depression, generalized anxiety disorder, GAD, major depressive disorder, MDD, fMRI, functional magnetic resonance imaging, video, natural vision, default mode network, amygdala, dynamic.
Authors: DeDora, Nedic, Katti, Arnab, Wald, Takahashi, Van Dijk, Strey, Mujica-Parodi. Keywords: signal fluctuation sensitivity, SFS, temporal signal to noise ratio, tSNR, dynamic phantom, phantom, fidelity, scanner, artifact, quality metric, resting-state fMRI, functional magnetic resonance imaging, functional MRI, connectivity, default mode network, BOLD.
Authors: Cha, DeDora, Nedic, Ide, Greenberg, Hajcak, Mujica-Parodi. Keywords: anxiety, clinical anxiety, generalized anxiety disorder, fear generalization, fear conditioning, inferior frontal gyrus, IFG, ventromedial prefrontal cortex, vmPFC, amygdala, prefrontal-limbic, control circuit, control systems, feedback, regulation, dysregulation, power spectrum scale invariance, PSSI, autocorrelation, entropy, dynamic causal modeling, DCM, diffusion MRI, tractography, fMRI, functional magnetic resonance imaging, connectivity, emotion regulation.
Authors: Ide, Hu, Zhang, Mujica-Parodi, Li. Keywords: cocaine, cocaine addiction, cocaine dependence, addiction, stimulant, cocaine misuse, cognitive control, stop signal task, post-signal slowing, conflict monitoring, power spectrum scale invariance, PSSI, BOLD, fMRI, functional magnetic resonance imaging, MRI, prefrontal cortex, inferior frontal gyrus, frontoparietal, neural marker.
Authors: Cha, Greenberg, Song, Blair Simpson, Posner, Mujica-Parodi. Keywords: hippocampus, hippocampal subdivisions, CA1, microstructure, anxiety, depression, generalized anxiety disorder, GAD, MDD, comorbidity, threat processing, MRI, magnetic resonance imaging, diffusion MRI, structural MRI, functional MRI, fMRI, hippocampal segmentation, structural equation modeling, SEM.
Authors: Carlson, Cha, Fekete, Greenberg, Mujica-Parodi. Keywords: skydive, skydiving, euphoria, hedonia, positive affect, reward, medial orbitofrontal cortex, orbitofrontal cortex, medial prefrontal cortex, brain volume, structural MRI, magnetic resonance imaging, amygdala, hippocampus, corticolimbic.
Authors: Nedic, Stufflebeam, Rondinoni, Velasco, dos Santos, Leite, Gargaro, Mujica-Parodi, Ide. Keywords: epilepsy, temporal lobe epilepsy, epileptogenic foci, seizure, resting-state fMRI, functional magnetic resonance imaging, network dynamics, autocorrelation function, entropy, chaotic dynamics, functional connectivity, classification, memory, EEG, neurodiagnostics.
Authors: Breen, Beliakova-Bethell, Mujica-Parodi, Carlson, Ensign, Woelk, Rana. Keywords: stress, acute psychological stress, skydive, skydiving, immune system, immune response, leukocytes, natural killer cells, gene expression, transcription, gene co-expression network, cortisol, catecholamines, endocrine, autonomic, sex differences, periphery.
Authors: DeDora, Suhrland, Goenka, Mullick Chowdhury, Lalwani, Mujica-Parodi, Sitharaman. Keywords: indocyanine green, ICG, cyclodextrin, Captisol, fluorescence, near-infrared fluorophore, inclusion complex, vascular imaging, biomaterials, formulation.
Authors: Greenberg, Carlson, Rubin, Cha, Mujica-Parodi. Keywords: anticipation, anxious anticipation, uncertainty, valence, arousal, aversive, positive, reward, emotion, films, movie clips, fMRI, functional magnetic resonance imaging, anterior insula, anterior cingulate, nucleus accumbens, medial prefrontal cortex.
Authors: Carlson, Mujica-Parodi. Keywords: attention, attentional orienting, attentional disengagement, fearful faces, fear, threat, conscious, nonconscious, emotion.
Authors: Rădulescu, Radulescu, Mujica-Parodi. Keywords: power spectrum scale invariance, PSSI, scale-free, complexity, pink noise, 1/f, network connectivity, network density, excitatory, inhibitory, control system, prefrontal-limbic, meso-circuit, model, modeling, simulation, stochastic differential equations, neurovascular, hemodynamic, fMRI, functional magnetic resonance imaging, anxiety, biomarker, regulation.
Authors: Mujica-Parodi, Carlson, Cha, Rubin. Keywords: sensation-seeking, risk, brave, reckless, skydive, skydiving, threat perception, fear, stress, cortisol, anxiety, resilience, amygdala, prefrontal-limbic, prefrontal cortex, inferior frontal gyrus, cortical thickness, regulation, complexity, chaos, fractal, power spectrum scale invariance, PSSI, fMRI, functional MRI, structural MRI, structural equation modeling.
Authors: Cha, Greenberg, Carlson, Dedora, Hajcak, Mujica-Parodi. Keywords: generalized anxiety disorder, GAD, anxiety, fear generalization, fear conditioning, threat, safety, ventromedial prefrontal cortex, vmPFC, corticolimbic, cortical thickness, functional connectivity, structural connectivity, resting-state, tractography, diffusion MRI, structural MRI, fMRI, functional magnetic resonance imaging, BOLD.
Authors: Cha, Carlson, Dedora, Greenberg, Proudfit, Mujica-Parodi. Keywords: generalized anxiety disorder, GAD, anxiety, fear generalization, overgeneralization of fear, fear conditioning, threat, ventral tegmental area, VTA, dopamine, dopaminergic, mesocorticolimbic, connectivity, fMRI, functional magnetic resonance imaging, trait anxiety.
Authors: Carlson, Cha, Harmon-Jones, Mujica-Parodi, Hajcak. Keywords: BDNF, genotype, genetics, uncinate fasciculus, amygdala, prefrontal cortex, anterior cingulate, white matter, microstructure, diffusion tensor imaging, DTI, diffusion MRI, tractography, attention bias, threat, nonconscious, dot-probe, backward masking, anxiety.
Authors: Rubin, Fekete, Mujica-Parodi. Keywords: complexity, complexity measures, fractal, Hurst exponent, power spectrum, Higuchi fractal dimension, detrended fluctuation analysis, wavelet, algorithm, artifact, sensitivity, signal processing, time series, scanner, fMRI, functional magnetic resonance imaging, methods.
Authors: Radulescu, Mujica-Parodi. Keywords: chemosensory, chemosignals, alarm pheromones, pheromones, stress sweat, sweat, olfaction, olfactory bulb, fear, stress, emotion, amygdala, gender differences, sex differences, fMRI, functional magnetic resonance imaging.
Authors: Greenberg, Carlson, Cha, Hajcak, Mujica-Parodi. Keywords: generalized anxiety disorder, GAD, anxiety, fear generalization, fear conditioning, fear inhibition, fear regulation, ventromedial prefrontal cortex, vmPFC, insula, anterior cingulate, amygdala, connectivity, psychophysiological interaction, fMRI.
Authors: Fekete, Zach, Mujica-Parodi, Turner. Keywords: amyotrophic lateral sclerosis, ALS, neurodegeneration, neurodegenerative disorder, multiple kernel learning, machine learning, classification, pattern detection, biomarker, resting-state fMRI, functional magnetic resonance imaging, functional connectivity, motor network, complex network analysis, cerebellum, basal ganglia.
Authors: Fekete, Wilf, Rubin, Edelman, Malach, Mujica-Parodi. Keywords: classification, machine learning, kernel learning, block diagonal optimization, BDopt, complex network analysis, graph theory, functional connectivity, resting-state fMRI, functional magnetic resonance imaging, schizophrenia, sleep, neurodiagnostics.
Authors: Fekete, Beacher, Cha, Rubin, Mujica-Parodi. Keywords: near-infrared spectroscopy, NIRS, fNIRS, small-world network, complex network, prefrontal cortex, children, toddlers, development, developmental psychopathology, temperament, effortful control, anxiety, depression, ADHD, neurodiagnostics, naturalistic stimuli.
Authors: Carlson, Cha, Mujica-Parodi. Keywords: attention bias, attentional bias, threat, masked fearful faces, fear, nonconscious, dot-probe, backward masking, amygdala, anterior cingulate, uncinate fasciculus, functional connectivity, structural connectivity, diffusion tensor imaging, DTI, MRI, social perception, superior temporal sulcus, temporoparietal junction, anxiety.
Authors: Rubin, Botanov, Hajcak, Mujica-Parodi. Keywords: chemosensory, chemosignals, stress sweat, sweat, stress, skydive, skydiving, faces, threat, emotion, event-related potentials, ERP, late positive potential, LPP, EEG, attention.
Authors: Radulescu, Rubin, Strey, Mujica-Parodi. Keywords: schizophrenia, paranoid schizophrenia, power spectrum scale invariance, PSSI, pink noise, white noise, Poincaré maps, complexity, chaos, regulation, dysregulation, prefrontal cortex, orbitofrontal cortex, Brodmann Area 10, prefrontal-limbic, emotion, fMRI, functional magnetic resonance imaging.
Authors: Carlson, Mujica-Parodi, Harmon-Jones, Hajcak. Keywords: serotonin transporter gene, 5HTTLPR, genetics, genotype, spatial attention, attention bias, orienting, threat, masked fearful faces, fear, backward masking, dot-probe, nonconscious.
Authors: Carlson, Beacher, Reinke, Habib, Harmon-Jones, Mujica-Parodi, Hajcak. Keywords: attention bias, threat, fear, nonconscious, masked fearful faces, backward masking, dot-probe, anterior cingulate cortex, ACC, amygdala, gray matter volume, voxel-based morphometry, VBM, structural MRI, magnetic resonance imaging, anxiety, replication.
Authors: Greenberg, Carlson, Cha, Hajcak, Mujica-Parodi. Keywords: fear generalization, fear conditioning, generalization gradient, conditioned stimulus, insula, anterior cingulate, caudate, supplementary motor area, neural reactivity, pupillary response.
Authors: Carlson, Dikecligil, Greenberg, Mujica-Parodi. Keywords: reappraisal, trait reappraisal, resilience, stress, acute psychological stress.
Authors: Fekete, Rubin, Carlson, Mujica-Parodi. Keywords: near-infrared spectroscopy, NIRS, fNIRS, anatomical localization, optodes, registration, algorithm, NIRS Analysis Package, NAP, Matlab toolbox, software, methods.
Authors: Fekete, Rubin, Carlson, Mujica-Parodi. Keywords: near-infrared spectroscopy, NIRS, fNIRS, NIRS Analysis Package, NAP, Matlab toolbox, software, noise reduction, motion artifacts, statistical inference, general linear model, hemodynamic, methods.
Authors: DeDora, Carlson, Mujica-Parodi. Keywords: stress, acute stress, skydive, skydiving, threat, emotion identification, ambiguous faces, aggression, affect, sex differences, gender, women, virtual reality.
Authors: Carlson, Greenberg, Rubin, Mujica-Parodi. Keywords: anxiety, anxious anticipation, anticipation, trait anxiety, anterior insula, insula, amygdala, interoception, fMRI, functional magnetic resonance imaging, aversive.
Authors: Carlson, Foti, Mujica-Parodi, Harmon-Jones, Hajcak. Keywords: reward, reward processing, ventral striatum, nucleus accumbens, medial prefrontal cortex, mesocorticolimbic, dopamine, feedback negativity, event-related potentials, ERP, EEG, fMRI, functional magnetic resonance imaging, BOLD, gambling task, multimodal.
Authors: Tolkunov, Rubin, Mujica-Parodi. Keywords: power spectrum scale invariance, PSSI, power spectrum density, power-law scaling, self-similarity, control system, negative feedback, regulation, dysregulation, limbic, amygdala, trait anxiety, anxiety, heart rate variability, HRV, autonomic, fMRI, functional MRI, time series, faces.
Authors: Dikecligil, Mujica-Parodi. Keywords: heart rate variability, HRV, ECG, electrocardiogram, Holter, ambulatory, autonomic nervous system, stress, acute emotional stress, skydive, skydiving, cardiac, regulation.
Authors: Carlson, Mujica-Parodi. Keywords: reappraisal, dispositional reappraisal, emotion regulation, anxious anticipation, anticipation, anxiety, anterior insula, insula, fMRI, functional magnetic resonance imaging, aversive.
Authors: Carlson, Greenberg, Mujica-Parodi. Keywords: anger, trait anger, anger expression, aggression, amygdala, fearful faces, masked faces, fear, BOLD, fMRI.
Authors: Tolkunov, Rubin, Carlson, Greenberg, Mujica-Parodi. Keywords: power spectrum density, Shannon entropy, entropy, limbic, dysregulation, fMRI, NIRS, near-infrared spectroscopy.
Authors: Taylor, Mujica-Parodi, Potterat, Momen, Ward, Padilla, Markham, Evans. Keywords: anger, anger expression, stress, stress response, military, survival training, operational stress, individual differences.
Authors: Taylor, Mujica-Parodi, Padilla, Markham, Potterat, Momen, Sander, Larson. Keywords: stress, acute stress, coping, perceived stress, military, survival training, behavioral predictors.
Authors: Rădulescu, Radulescu, Mujica-Parodi. Keywords: schizophrenia, prefrontal-limbic, amygdala, hippocampus, prefrontal cortex, principal component analysis, PCA, network analysis, time series, emotional arousal, emotion, faces, fMRI, functional magnetic resonance imaging, dysregulation, dynamics.
Authors: Mujica-Parodi, Strey, Frederick, Savoy, Cox, Botanov, Tolkunov, Rubin, Weber. Keywords: chemosensory, chemosignals, alarm substances, stress sweat, sweat, emotional stress, stress, amygdala, olfaction, odor, emotion perception, fMRI.
Authors: Mujica-Parodi, Renelique, Taylor. Keywords: body fat, cortisol, endocrine, stress, acute emotional stress, skydive, skydiving, cognition, cognitive resilience, working memory, spatial processing, attention, heart rate variability, HRV, autonomic, anxiety.
Authors: Mujica-Parodi, Korgaonkar, Ravindranath, Greenberg, Tomasi, Wagshul, Ardekani, Guilfoyle, Khan, Zhong, Chon, Malaspina. Keywords: limbic, dysregulation, regulation, control system, negative feedback, heart rate variability, HRV, ECG, autonomic, sympathetic, trait anxiety, anxiety, amygdala, hippocampus, prefrontal, faces, fMRI, BOLD, time series.
Authors: Taylor, Markham, Reis, Padilla, Potterat, Drummond, Mujica-Parodi. Keywords: physical fitness, aerobic fitness, stress, military, survival training, trait anxiety, post-traumatic stress disorder, PTSD, Impact of Events Scale.
Authors: Rădulescu, Radulescu, Mujica-Parodi. Keywords: schizophrenia, prefrontal-limbic, dysregulation, control systems, systems approach, negative feedback, homeostasis, perturbation, amygdala, prefrontal cortex, Brodmann area 9, emotional arousal, faces, fMRI, functional magnetic resonance imaging, time series, cross-correlation.
Authors: Taylor, Sausen, Potterat, Mujica-Parodi, Reis, Markham, Padilla, Taylor. Keywords: stress, military, survival training, cortisol, DHEAS, dehydroepiandrosterone, endocrine, allostatic load, performance, dissociation, PTSD.
Authors: Taylor, Sausen, Mujica-Parodi, Potterat, Yanagi, Kim. Keywords: stress, operational stress, military, SERE, survival training, neurophysiology, neuroendocrine, fMRI, acoustic startle, heart rate variability, HRV, cardiac, performance, systems approach, methods.
Authors: Mujica-Parodi, Yeragani, Malaspina. Keywords: schizophrenia, psychosis, heart rate variability, HRV, ECG, autonomic nervous system, vagal, cardiac, nonlinear complexity, symbolic dynamics, spectral analysis, atypical antipsychotics, medication, stress, sleep, limbic.
Authors: Malaspina, Simon, Goetz, Corcoran, Coleman, Printz, Mujica-Parodi, Wolitzky. Keywords: schizophrenia, figure-ground perception, visual perception, visual attention, neuropsychology, negative symptoms, reliability, top-down processing.
Authors: Malaspina, Harkavy-Friedman, Corcoran, Mujica-Parodi, Printz, Gorman, Van Heertum. Keywords: schizophrenia, familial, sporadic, subgroups, heterogeneity, resting, regional cerebral blood flow, rCBF, SPECT, single photon emission computed tomography, hypofrontality, neuroimaging.
Authors: Mujica-Parodi, Corcoran, Greenberg, Sackeim, Malaspina. Keywords: schizophrenia, delusions, formal thought disorder, cognitive symptoms, logical reasoning, cognitive gating, emotional arousal, arousal, affect, stress, information processing, jumping to conclusions.
Authors: Corcoran, Mujica-Parodi, Yale, Leitman, Malaspina. Keywords: schizophrenia, psychosis, stress, psychosocial stress, vulnerability, hippocampus, neurotoxicity, neurodevelopmental model, neurodegeneration, gene-environment interaction, MRI.
Authors: Mujica-Parodi, Sackeim. Keywords: delusions, diagnosis, cultural invariance, culture, information processing.
Authors: Mujica-Parodi, Malaspina, Sackeim. Keywords: schizophrenia, delusions, delusional thought, logical reasoning, logic, logical processing, affect, emotion, inference, premises.


