Publications

Analytics Method Development

Clinical Neuroscience
Computational Neuroscience
Analytics Method Development
The Role of Structural Connectivity on Brain Function Through a Markov Model of Signal Transmission
PLoS ONE
•
2025
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Basic Neuroscience
Clinical Neuroscience
Computational Neuroscience
Analytics Method Development
Instrumentation Development
Integration of Metabolic Flux Equations for Neurotransmitter Cycling Predicts Glutamate and GABA Dynamics in Response to Ketone Body Administration
bioRxiv (preprint)
•
preprint
Basic Neuroscience
Computational Neuroscience
Analytics Method Development
Scientific Machine Learning of Chaotic Systems Discovers Governing Equations for Neural Populations
arXiv (preprint)
•
2025
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Basic Neuroscience
Clinical Neuroscience
Analytics Method Development
Mechanistic signatures of comorbid PTSD with cognitive impairment implicate cortisol-induced neural toxicity
Neuropsychopharmacology
•
2016
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Basic Neuroscience
Clinical Neuroscience
Computational Neuroscience
Analytics Method Development
Instrumentation Development
Opportunities and Challenges in Precision Neurotherapeutics
Annual Review of Biomedical Engineering
•
2026
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Basic Neuroscience
Clinical Neuroscience
Computational Neuroscience
Analytics Method Development
Biomimetic Model of Corticostriatal Micro-Assemblies Discovers a Neural Code
Nature Communications
•
2025
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Analytics Method Development
Increasing Spectral DCM Flexibility and Speed by Leveraging Julia's ModelingToolkit and Automated Differentiation
Imaging Neuroscience
•
2025
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Analytics Method Development
Parameter estimation from an Ornstein-Uhlenbeck process with measurement noise
Physical Review E
•
2024
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Computational Neuroscience
Analytics Method Development
Achieving Occam's Razor: Deep Learning for Optimal Model Reduction
PLoS Computational Biology
•
2024
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Basic Neuroscience
Clinical Neuroscience
Computational Neuroscience
Analytics Method Development
Ketosis Regulates K+ Ion Channels, Strengthening Brain-Wide Signaling Disrupted by Age
Imaging Neuroscience
•
2024
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Analytics Method Development
Quantifying Individual Variability in Neural Control Circuit Regulation Using Single-Subject fMRI
Copmutational brain & Behavior
•
2023
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Computational Neuroscience
Basic Neuroscience
Analytics Method Development
Early Path Dominance as a Principle for Neurodevelopment
Proceedings of the National Academy of Sciences of the USA
•
2023
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Clinical Neuroscience
Analytics Method Development
Metabolism Modulates Network Synchrony in the Aging Brain
Proceedings of the National Academy of Sciences of the USA
•
2021
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Basic Neuroscience
Analytics Method Development
The Refractory Period Matters: Unifying Mechanisms of Macroscopic Brain Waves
Neural Computation
•
2021
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Analytics Method Development
Machine Learning Predicts Outcomes of Phase III Clinical Trials for Prostate Cancer
Algorithms
•
2021
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Analytics Method Development
Fast Spatial Autocorrelation
Proceedings of the IEEE International Conference on Data Mining (ICDM)
•
2020
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Analytics Method Development
Inferring a Network from Dynamical Signals at Its Nodes
PLOS Computational Biology
•
2020
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Computational Neuroscience
Analytics Method Development
Making Sense of Computational Psychiatry
International Journal of Neuropsychopharmacology
•
2020
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Analytics Method Development
Instrumentation Development
Signal Fluctuation Sensitivity: An Improved Metric for Optimizing Detection of Resting-State fMRI Networks
Frontiers in Neuroscience
•
2016
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Analytics Method Development
Network connectivity modulates power spectrum scale invariance
Neuroimage
•
2014
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Clinical Neuroscience
Analytics Method Development
The Fine Line Between 'Brave' and 'Reckless': Amygdala Reactivity and Regulation Predict Recognition of Risk
Neuroimage
•
2014
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Analytics Method Development
Optimizing complexity measures for FMRI data: algorithm, artifact, and sensitivity
PLos One
•
2013
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Clinical Neuroscience
Analytics Method Development
Multiple kernel learning captures a systems-level functional connectivity biomarker signature in amyotrophic lateral sclerosis
PLoS One
•
2013
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Analytics Method Development
Combining classification with fMRI-derived complex network measures for potential neurodiagnostics
PLoS One
•
2013
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Analytics Method Development
Instrumentation Development
A stand-alone method for anatomical localization of NIRS measurements
NeuroImage
•
2011
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Analytics Method Development
The NIRS Analysis Package: noise reduction and statistical inference
PLOS One
•
2011
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Clinical Neuroscience
Analytics Method Development
Power spectrum scale invariance quantifies limbic dysregulation in trait anxious adults using fMRI: adapting methods optimized for characterizing autonomic dysregulation to neural dynamic time series.
NeuroImage
•
2010
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Clinical Neuroscience
Analytics Method Development
Power Spectrum Density and Shannon Entropy Methods Quantify Limbic Dysregulation using fMRI and NIRS.
Neuroimage
•
2009
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Clinical Neuroscience
Analytics Method Development
Instrumentation Development
Chemosensory cues to conspecific emotional stress activate amygdala in humans.
PLoS One
•
2009
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Clinical Neuroscience
Analytics Method Development
Limbic dysregulation is associated with lowered heart rate variability and increased trait anxiety in healthy adults
Human Brain Mapping
•
2009
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Analytics Method Development
Nonlinear complexity and spectral analyses of heart rate variability in medicated and unmedicated patients with schizophrenia
Neuropsychobiology
•
2005
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State University of New York at Stony Brook
Laufer Center for Physical and Quantitative Biology

Stony Brook, NY 11794-5252
Mass General Hospital–MIT–Harvard Medical School
Athinoula A. Martinos Center for Biomedical Imaging
Boston, MA 02129
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